"In het verleden behaalde resultaten bieden geen garanties voor de toekomst"

These are the ramblings of Matthijs Kooijman, concerning the software he hacks on, hobbies he has and occasionally his personal life.

Questions? Praise? Blame? Feel free to contact me.

My old blog (pre-2006) is also still available.

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Replaced GPG key

For anyone that cares: I just replaced my GPG (Gnu Privacy Guard) key that I use for signing my emails and Debian uploads.

My previous key was already 9 years old and used a 1024-bit DSA key. That seemed like a good idea at the time, but for some time these small keys and signatures using SHA-1 have been considered weak and their use is discouraged. By the end of this year, Debian will be actively removing the weak keys from their keyring, so about time I got a stronger key as well (not sure why I didn't act on this before, perhaps it got lost on a TODO list somewhere).

In any case, my new key has ID A1565658 and fingerprint E7D0 C6A7 5BEE 6D84 D638 F60A 3798 AF15 A156 5658. It can be downloaded from the keyservers, or from my own webserver (the latter includes my old key for transitioning).

Now, I should find some Debian Developers to meet in person and sign my key. Should have taken care of this before T-Dose last year...

Automatically restarting my serial console on Arduino uploads

When working with an Arduino, you often want the serial console to stay open, for debugging. However, while you have the serial console open, uploading will not work (because the upload relies on the DTR pin going from high to low, which happens when opening up the serial port, but not if it's already open). The official IDE includes a serial console, which automatically closes when you start an upload (and once this pullrequest is merged, automatically reopens it again).

However, of course I'm not using the GUI serial console in the IDE, but minicom, a text-only serial console I can run inside my screen. Since the IDE (which I do use for compiling uploading, by calling it on the commandline using a Makefile - I still use vim for editing) does not know about my running minicom, uploading breaks.

I fixed this using some clever shell scripting and signal-passing. I have an arduinoconsole script (that you can pass the port number to open - pass 0 for /dev/ttyACM0) that opens up the serial console, and when the console terminates, it is restarted when you press enter, or a proper signal is received.

The other side of this is the Makefile I'm using, which kills the serial console before uploading and sends the restart signal after uploading. This means that usually the serial console is already open again before I switch to it (or, I can switch to it while still uploading and I'll know uploading is done because my serial console opens again).

For convenience, I pushed my scripts to a github repository, which makes it easy to keep them up-to-date too:

Bouncing packets: Kernel bridge bug or corner case?

While setting up Tika, I stumbled upon a fairly unlikely corner case in the Linux kernel networking code, that prevented some of my packets from being delivered at the right place. After quite some digging through debug logs and kernel source code, I found the cause of this problem in the way the bridge module handles netfilter and iptables.

Just in case someone else actually finds himself in this situation and actually manages to find this blogpost, I'll detail my setup, the problem and it solution here.

See more ...

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Introducing Tika

(This post has been lying around as a draft for a few years, thought I'd finish it up and publish it now that Tika has finally been put into production)

A few months years back, I purchased a new server together with some friends, which we've named "Tika" (daughter of "Tita Tovenaar", both wizards from a Dutch television series from the 70's). This name combine's Daenney's "wizards and magicians" naming scheme with my "Television shows from my youth" naming schemes quite neatly. :-)

It's a Supermicro 5015A rack server sporting an Atom D510 dual core processor, 4GB ram, 500GB of HD storage and recently added 128G of SSD storage. It is intended to replace Drsnuggles, my current HP DL360G2 (which has been very robust and loyal so far, but just draws too much power) as well as Daenney's Zeratul, an Apple Xserve. Both of our current machines draw around 180W, versus just around 20-30W for Tika. :-D You've got to love the Atom processor (and it probably outperforms our current hardware anyway, just by being over 5 years newer...).

Over the past three years, I've been working together with Daenney and Bas on setting up the software stack on Tika, which proved a bit more work than expected. We wanted to have a lot of cool things, like LXC containers, privilege separation for webapplications, a custom LDAP schema and a custom web frontend for user (self-)management, etc. Me being the perfectionist I am, it took quite some effort to get things done, also producing quite a number of bug reports, patches and custom scripts in the process.

Last week, we've finally put Tika into production. My previous server, drsnuggles had a hardware breakdown, which forced me wrap up Tika's configuration into something usable (which still took me a week, since I seem to be unable to compromise on perfection...). So now my e-mail, websites and IRC are working as expected on Tika, with the stuff from Bas and Daenney still needing to be migrated.

I also still have some draft postings lying around about Maroesja, the custom LDAP schema / user management setup we are using. I'll try to wrap those up in case others are interested. The user management frontend we envisioned hasn't been written yet, but we'll soon tire of manual LDAP modification and get to that, I expect :-)

JTAG and SPI headers for the Pinoccio Scout

The Pinoccio Scout is a wonderful Arduino-like microcontroller board that has builtin mesh networking, a small form factor and a ton of resources (at least in Arduino terms: 32K of SRAM and 256K of flash).

However, flashing a new program into the scout happens through a serial port at 115200 baud. That's perfectly fine when you only have 32K of flash or for occasional uploads. But when you upload a 100k+ program dozens of times per day, it turns out that that's actually really slow! Uploading and verifying a 104KiB sketch takes over 30 seconds, just too long to actually wait for it (so you do something else, get distracted, and gone is the productivity).

See more ...

Using a JTAGICE3 programmer under Linux: Setting up permissions

Last week, I got a fancy new JTAGICE3 programmer / debugger. I wanted to achieve two things in my Pinoccio work: Faster uploading of programs (Having 256k of flash space is nice, but flashing so much code through a 115200 baud serial connection is slow...) and doing in-circuit debugging (stepping through code and dumping variables should turn out easier than adding serial prints and re-uploading every time).

In any case, the JTAGICE3 device is well-supported by avrdude, the opensource uploader for AVR boards. However, unlike devices like the STK500 development board, the AVR dragon programmer/debugger and the Arduino bootloader, which use an (emulated) serial port to communicate, the JTAGICE3 uses a native USB protocol. The upside is that the data transfer rate is higher, but the downside is that the kernel doesn't know how to talk to the device, so it doesn't expose something like /dev/ttyUSB0 as for the other devices.

avrdude solves this by using libusb, which can talk to USB devices directly, through files in /dev/usb/. However, by default these device files are writable only by root, since the kernel has no idea what kind of devices they are and whom to give permissions.

To solve this, we'll have to configure the udev daemon to create the files in /dev/usb with the right permissions. I created a file called /etc/udev/rules.d/99-local-jtagice3.rules, containg just this line:

SUBSYSTEM=="usb", ATTRS{idVendor}=="03eb", ATTRS{idProduct}=="2110", GROUP="dialout"


This matches the JTAGICE3 specifically using it's USB vidpid (03eb:2110, use lsusb to find the id of a given device) and changes the group for the device file to dialout (which is also used for serial devices on Debian Linux), but you might want to use another group (don't forget to add your own user to that group and log in again, in any case).

Current measurement helper board

Recently, I needed to do battery current draw measurements on my Pinoccio boards. Since the battery is connected using this tinywiny JST connector, I couldn't just use some jumper wires to redirect the current flow through my multimeter. I ended up using jumper wires, combined with my Bus Pirate fanout cable, which has female connectors just small enough, to wire everything up. The result was a bit of a mess:

Admittedly, once I cleaned up all the other stuff around it from my desk for this picture, it was less messy than I thought, but still, jamming in jumper wires into battery connectors like this is bound to wear them out.

So, I ordered up some JST FSH connectors (as used by the battery) and some banana sockets and built a simple board that allows connecting a power source and a load, keeping the ground pins permanently connected, but feeding the positive pins through a pair of banana sockets where a current meter can plug in. For extra flexibility, I added a few other connections, like 2.54mm header pins and sockets, a barrel jack plug and more banana sockets for the power source and load. I just realized I should also add USB connectors, so I can easily measure current used by an USB device.

The board also features a switch (after digging in my stash, I found one old three-way switch, which is probably the first component to die in this setup. The switch allows switching between "on", "off" and "redirect through measurement pins" modes. I tried visualizing the behaviour of the pins on the top of the PCB, but I'm not too happy with the result. Oh well, as long as I know what does :-)

All I need is a pretty case to put under the PCB and a μCurrent to measure small currents accurately and I'm all set!

Update: The board was expanded by adding an USB-A and USB-B plug to interrupt USB power, with some twisted wire to keep the data lines connected, which seems to work (not shown in the image).

Updating the Xprotolab portable firmware on Linux

I recently got myself an Xprotolab Portable, which is essentially a tiny, portable 1Msps scope (in hindsight I might have better gotten the XMinilab Portable which is essentially the same, but slightly bigger, more expensive and with a bigger display. Given the size of the cables and carrying case, the extra size of the device itself is negligable, while the extra screen size is significant).

In any case, I wanted to update the firmware of the device, but the instructions refer only to a Windows-only GUI utility from Atmel, called "FLIP". I remembered seeing a flip.c file inside the avrdude sources though, so I hoped I could also flash this device using avrdude on Linux. And it worked! Turns out it's fairly simple.

1. Activate the device's bootloader, by powering off, then press K1 and keep it pressed while turning the device back on with the menu key. The red led should light up, the screen will stay blank.
2. Get the appropriate firmware hex files from the Xprotolab Portable page. You can find them at the "Hex" link in the top row of icons.
3. Run avrdude, for both the application and EEPROM contents:

sudo avrdude -c flip2 -p x32a4u -U application:w:xprotolab-p.hex:i
sudo avrdude -c flip2 -p x32a4u -U eep:w:xprotolab-p.eep:i


I'm running under sudo, since this needs raw USB access to the USB device. Alternatively, you can set up udev to offer access to your regular user (like I did for the JTAGICE3), but that's probably too much effort just for a one-off firmware update.

4. Done!

Note that you have to use avrdude version 6.1 or above, older versions don't support the FLIP protocol.

Dynamic memory allocation debugging

While trying to track down a reset bug in the Pinoccio firmware, I suspected something was going wrong in the dynamic memory management (e.g., double free, or buffer overflow). For this, I wrote some code to log all malloc, realloc and free calls, as wel as a python script to analyze the output.

This didn't catch my bug, but perhaps it will be useful to someone else.

In addition to all function calls, it also logs the free memory after the call and shows the return address (e.g. where the malloc is called from) to help debugging.

It uses the linker's --wrap, which allows replacing arbitrary functions with wrappers at link time. To use it with Arduino, you'll have to modify platform.txt to change the linker options (I hope to improve this on the Arduino side at some point, but right now this seems to be the only way to do this).